The OpenSWATH Workflow enables targeted data analysis of data-independent acquisition (DIA) or SWATH-MS proteomic data. The main workflow consists of OpenSWATH, PyProphet, TRIC, IPF and TAPIR. This website provides documentation on installation and application of the tools.
2017-12-28: The tools of the OpenSWATH Workflow now provide experimental support for new SQLite-based file formats.
The tools and workflows are being developed at the Aebersold Group at IMSB, ETH Zurich and Stanford University with contributions from others. The core components are implemented as part of the OpenMS framework, the PyProphet, and msproteomicstools distributions.
- Generic Transition Lists
- Trans-Proteomic Pipeline
- Peptide Query Parameter Generation
- Integrated OpenSWATH Workflow